Researchers have developed AmpliconSuite, an open-source software pipeline that reconstructs focal gene amplifications, including extrachromosomal circular DNA (ecDNA) and breakage-fusion-bridge cycles, directly from cancer whole-genome sequencing.
Jens Luebeck, Ted Liefeld, Ivy Tsz-Lo Wong, and 28 othersJens Luebeck, Ted Liefeld, Ivy Tsz-Lo Wong, Edwin Huang, Forrest Kim, Bhargavi Dameracharla, Michael Chan, Rohil Ahuja, Kyra Fetter, Dhruv Khatri, Kaiyuan Zhu, Thorin Tabor, Daniel Schreyer, Gino Prasad, Aditi Gnanasekar, Siavash Raeisi Dehkordi, Simone Spandau, Michał Adamaszek, Rishaan Kenkre, Tushar Agashe, Devika Torvi, Mădălina Giurgiu-Kraljič, Soyeon Kim, Hoon Kim, Peter Bailey, Roel G. W. Verhaak, Viraj Deshpande, Michael Reich, Paul S. Mischel, Jill P. Mesirov, Vineet Bafna fewer authors
University of California, San Diego; Stanford; Shanghai Jiao Tong; and 9 othersUniversity of California, San Diego; Stanford; Shanghai Jiao Tong; University of Glasgow; MOSEK ApS; Charité; Sungkyunkwan University; Champalimaud Foundation; Yale; The Bioinformatics Shop LLC; Mivax Therapeutics Inc; Sanford Burnham Prebys Medical Discovery Institute fewer institutions